PhysioDesigner
A modeling tool for multilevel physiological systems

Nov 2013

Version 1.0 beta6.1

PhysioDesigner 1.0 beta6.1


1st November, 2013

Install Note

Mac: Once you mount the disk image file you download, you will find a directory named "PhysioDesigner1.0b6.1". Please move the directory anyplace you want to put. That's all for installation.

Note 1) PhysioDesigner cannot be launched from the dmg mounted volume because of the lack of write permission of the volume. It is necessary to copy PhysioDesigner1.0b6.1 directory (which include PhysioDesigner.app, Morphology.app etc) somewhere on your local file system such as /Applications.

Note 2) If launch process fails, please try to remove $Users/.physiodesigner directory where some configuration related to PhysioDesigner are stored. By removing this file, configurations are reset to the default.

Note 3) Directory structure in PhysioDesigner1.0b6.1 is crucial for execution of PhysioDesigner.app and other apps. For example, all apps and server directly must be in the same directly.

Note 4) To install PhysioDesigner into Mountain Lion (OSX 10.8), users need to change the system preferences so that any applications (from other than Mac App Store) can be installed. Check System Preferences > Security & Privacy > General. "Allow applications downloaded from Anywhere".

Win: Please execute the installer by double clicking it. It installs a couple of necessary libraries such as Python, etc.

Note 1) On Windows XP with full windows update, Python 2.7 can cause problem, consequently PhysioDesigner cannot work, because PhysioDesigner depends on Python. So far we could not solve this issue. But if Python can work properly, PhysioDesigner itself should run OK.

Release Notes


On PhysioDesigner

A problem on linking a forwarding edge was fixed.
A problem of strange edge layout happened at a certain condition was fixed.
A problem on editing physical quantity was fixed.
On ImageViewer
Rubber band is now available to select voxels on VOL and RAW format data.
One time undo is supported in voxel selection.
Stacks Image 498
Linux el5.x86_64
Linux el6.x86_64
PhysioDesigner1.0b6.1_el5.x86_64.rpm
Note: These installers for linux are still experimental. If you noticed any problem on the installers, please contact us.


Flint 1.0 beta6.1


Flint can perform simulations of models created on PhysioDesigner.
Stacks Image 355
Linux el5.x86_64
Linux el6.x86_64
Note: These installers for linux are still experimental. If you noticed any problem on the installers, please contact us.

Install Note

Mac:
Note 1) To install PhysioDesigner into Mountain Lion (OSX 10.8), users need to change the system preferences so that any applications (from other than Mac App Store) can be installed. Check System Preferences > Security & Privacy > General. "Allow applications downloaded from Anywhere".

Release Notes

Now detailed log is shown in Log tab if some problems occurred in loading a model.
A problem occurred under certain condition with Runge-Kutta and Adams-Moulton was fixed.