PhysioDesigner
A modeling tool for multilevel physiological systems

Publications on PhysioDesigner


Year: all
Enter the category for this item: 2011
2011
Publication
  • default_titleSamik Ghosh, Yukiko Matsuoka, Yoshiyuki Asai, Kun-Yi Hsin and Hiroaki Kitano. (2011) Software for systems biology: from tools to integrated platforms. Nature Reviews Genetics. doi:10.1038/nrg3096
  • default_titleYoshiyuki Asai, Hideki Oka, Takeshi Abe, Masao Okita, Kenichi Hagihara, Taishin Nomura, Hiroaki Kitano. (2011) An Open Platform toward Large-Scale Multilevel Modeling and Simulation of Physiological Systems. Conf Proc 11th IEEE/IPSJ International Symposium on Applications and the Internet. pp.250-255.
  • Show More
Presentation
  • default_titleYoshiyuki Asai, Tatsuhide Okamoto, Takeshi Abe, Masao Okita, Ken-ichi Hagihara, Hideki Oka, Taishin Nomura, Hiroaki Kitano. PhysioDesigner: an open platform for multilevel modeling applicable to computational neurosicence. The 21st annual Conference of the Japanese Neural Network Society. December 15-17, 2011, Okinawa, Japan. pp. 214-215.
  • Show More
Enter the category for this item: 2012
2012
Publication
  • default_titleYoshiyuki Asai, Takeshi Abe, Masao Okita, Tomohiro Okuyama, Nobukazu Yoshioka, Shigetsohi Yokoyama, Masaru Nagaku, Ken-ichi Hagihara, Hiroaki Kitano. Multilevel modeling of Physiological Systems and Simulation Platform: PhysioDesigner, Flint and Flint K3 service.
    Conf Proc 12th IEEE/IPSJ International Symposium on Applications and the Internet. pp.215-219.
  • Show More
Presentation
  • default_titleYoshiyuki Asai, Hideki Oka, Alessandro E.P. Villa, Hiroaki Kitano. Multilevel modeling platform and its application for modeling in neuroscience. 2012 International Symposium on Nonlinear Theory and its Applications. October 22-26, 2012, Palma, Majorca, Spain.
  • default_titleHideki Oka, Ken-ichiro Iwasaki, Yoshiyuki Asai, Taishin Nomura, Yoko Yamaguchi. EEG Analysis in PhysioDesigner. NeuroInformatics 2012. September 10-12, 2012, Munich, Germany. p. 128.
  • Show More
Enter the category for this item: 2013
2013
Publication
  • default_titleYoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Yomohiro Okuyama, Ken-ichi Hagihara, Ghosh Samik, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano. (2013) A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Conference Proceedings. pp.5529-5532. doi: 10.1109/EMBC.2013.6610802
  • Show More
Presentation
  • default_titleHideki Oka, Ken-ichiro Iwasaki, Yoshiyuki Asai, Taishin Nomura, Yoko Yamaguchi. Image based realistic EEG/MEG simulation in PhysioDesigner. Neuro2013, June 20-23, 2013, Kyoto, Japan.
  • default_titleTomohiro Okuyama, Masao Okita, Takeshi Abe, Yoshiyuki Asai, Taishin Nomura, Hiroaki Kitano, and Kenichi Hagihara. Accelerating General and Heterogeneous Biophysical Simulations Using the GPU. The 4th GPU Technology Conference (GTC 2013), May 2013, San Jose, CA, USA.
  • default_titleYoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Yomohiro Okuyama, Ken-ichi Hagihara, Yoshihisa Kurachi, Hiroaki Kitano. PhysioDesigner and Flint: a platform for multilevel modeling of physiological systems and simulation. V International Conference on Computational Bioengineering (ICCB2013), Sept 11 - 13, 2013, Leuven, Belgium.
  • default_titleYoshiyuki Asai, Takeshi Abe, Hideki Oka, Yukiko Matsuoka, Ghosh Samik, Yoshihisa Kurachi, Hiroaki Kitano. Multilevel modeling using SBML and PHML on PhysioDesigner. The 14th International Conference on Systems Biology (ICSB2013), Aug 30 - Sept 3, 2013, Copenhagen, Denmark.
  • default_titleYoshiyuki Asai, Hideki Oka, Li Li, Takeshi Abe, Yoshihisa Kurachi and Hiroaki Kitano. PhysioDesigner for Multilevel Neural System Modeling. Neuroinformatics2013, Aug 27 - 29, 2013, Stockholm, Sweden.
  • Show More
Enter the category for this item: 2014
2014
Publication
  • default_titleYoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Taishin Nomurak, Hiroaki Kitano. (2014) A Versatile Platform for Multilevel Modeling of Physiological Systems: SBML-PHML Hybrid Modeling and Simulation. Advanced Biomedical Engineering, 3(0), pp. 50-8. doi: 10.14326/abe.3.50
  • default_titleYoshiyuki Asai, "A versatile platform for multilevel modeling of physiological systems", in Kitano, H. (ed.), Systems Biology: The Biomedical & Life Sciences Collection, Henry Stewart Talks Ltd, London (online at http://hstalks.com/?t=BL1893839-Asai)
  • Show More
Presentation
  • default_titleYoshiyuki Asai, Ken Kuwae, Li Li, Hiroaki Kitano, Hiroaki Wagatsuma, Yoko Yamaguchi. Interoperability between multilevel modeling platform PhysioDesigner and databases in Physiome.jp and Dynamic Brain Platform through Garuda platform. Neuroinformatics 2014, 25 August - 27, 2014, Leiden, Netherlands.
  • default_titleYoshiyuki Asai, Takeshi Abe, Li Li, Hideki Oka, Yoshihisa Kurachi, Hiroaki Kitano. Development of multilevel neural network modeling integrating spike train data on PhysioDesigner. INCF Japan Node International Workshop: Advances in Neuroinformatics (AINI) 2014, September 25, 2014, Wako, Japan
  • Show More
Enter the category for this item: 2015
2015
Publication
  • default_titleYoshiyuki Asai, Takeshi Abe, Li Li, Hideki Oka, Taishin Nomura, Hiroaki Kitano. Databases for multilevel biophysiology research available at Physiome.jp. Frontiers in Physiology, 6:251, doi:10.3389/fphys.2015.00251. 2015.
  • Show More
Presentation
  • default_titleYoshiyuki Asai, Takeshi Abe, Li Li, Hideki Oka, Taishin Nomura, Hiroaki Kitano. Databases for multilevel biophysiology research available at Physiome.jp. Frontiers in Physiology, 6:251, doi:10.3389/fphys.2015.00251. 2015.
  • Show More
Enter the category for this item: 2016
2016
Publication
Presentation
  • default_titleYoshiyuki Asai, Samik Ghosh, Nikolaos Tsorman, Hiroaki Wagatsuma. Linking INCF Japan Node Platforms with Application Networks based on Garuda Platform. doi:10.14931/aini2016.ps.4 INCF Japan Node International Workshop: Advances in Neuroinformatics (AINI) 2016, Wako, Japan, 28 May - 29 May, 2016.
  • Show More
Enter the category for this item: 2017
2017
Publication
Presentation
  • default_titleYoshiyuki Asai, Takeshi Abe, Li Li, Hiroaki Kitano. Software platform supporting multilevel modeling and simulations of physiological systems toward systems toxicology. OpenTox Asia 2017, Daejeon, Korea, 17 May - 18 May, 2017.
  • default_titleYoshiyuki Asai. Software platform and supporting multilevel modeling and simulation of physiological systems. Cancer Nanotechnology Summer Symposium 2017, Jonson Comprehensive Cancer Center UCLA, 3 August, 2017, California, USA.
  • default_titleYoshiyuki Asai. Versatile platform for modeling and simulations in systems physiology and its applications. the sbv IMPROVER project datathon symposium, 13 October, 2017, Tokyo, Japan.
  • Show More
Enter the category for this item: 2018
2018
Publication
Presentation